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Quantitative Biology

Publications

Journal paper
Andrea Iannello, Simona Rolla, Alessandro Maglione, Giulio Ferrero, Valentina Bardina, Ilenia Inaudi, Stefania De Mercanti, Francesco Novelli, Lucrezia D'Antuono, Simona Cardaropoli, Tullia Todros, Maria Vittoria Turrini, Cinzia Cordioli, Giorgia Puorro, Angela Marsili, Roberta Lanzillo, Vincenzo Brescia Morra, Francesca Cordero, Michele De Bortoli, Luca Durelli, Andrea Visconti, Santina Cutrupi, Marinella Clerico
FRONTIERS IN IMMUNOLOGY,  2019
Follia, Laura; Ferrero, Giulio; Mandili, Giorgia; Beccuti, Marco; Giordano, Daniele; Spadi, Rosella; Satolli, Maria Antonietta; Evangelista, Andrea; Katayama, Hiroyuki; Hong, Wang; Momin, Amin A.; Capello, Michela; Hanash, Samir M.; Novelli, Francesco; Cordero, Francesca
FRONTIERS IN ONCOLOGY,  2019
Thomas, Andrew Maltez; Manghi, Paolo; Asnicar, Francesco; Pasolli, Edoardo; Armanini, Federica; Zolfo, Moreno; Beghini, Francesco; Manara, Serena; Karcher, Nicolai; Pozzi, Chiara; Gandini, Sara; Serrano, Davide; Tarallo, Sonia; Francavilla, Antonio; Gallo, Gaetano; Trompetto, Mario; Ferrero, Giulio; Mizutani, Sayaka; Shiroma, Hirotsugu; Shiba, Satoshi; Shibata, Tatsuhiro; Yachida, Shinichi; Yamada, Takuji; Wirbel, Jakob; Schrotz-King, Petra; Ulrich, Cornelia M; Brenner, Hermann; Arumugam, Manimozhiyan; Bork, Peer; Zeller, Georg; Cordero, Francesca; Dias-Neto, Emmanuel; Setubal, João Carlos; Tett, Adrian; Pardini, Barbara; Rescigno, Maria; Waldron, Levi; Naccarati, Alessio; Segata, Nicola
NATURE MEDICINE,  2019
Alessandrì, Luca; Cordero, Francesca; Beccuti, Marco; Arigoni, Maddalena; Olivero, Martina; Romano, Greta; Rabellino, Sergio; Licheri, Nicola; De Libero, Gennaro; Pace, Luigia; Calogero, Raffaele A
GIGASCIENCE,  2019
Tarallo, Sonia; Ferrero, Giulio; Gallo, Gaetano; Francavilla, Antonio; Clerico, Giuseppe; Realis Luc, Alberto; Manghi, Paolo; Thomas, Andrew Maltez; Vineis, Paolo; Segata, Nicola; Pardini, Barbara; Naccarati, Alessio; Cordero, Francesca
MSYSTEMS,  2019
Ferrero, Giulio; Licheri, Nicola; Coscujuela Tarrero, Lucia; De Intinis, Carlo; Miano, Valentina; Calogero, Raffaele Adolfo; Cordero, Francesca; De Bortoli, Michele; Beccuti, Marco
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES,  2019
Tarrero, Lucia Coscujuela; Ferrero, Giulio; Miano, Valentina; De Intinis, Carlo; Ricci, Laura; Arigoni, Maddalena; Riccardo, Federica; Annaratone, Laura; Castellano, Isabella; Calogero, Raffaele A.; Beccuti, Marco; Cordero, Francesca; De Bortoli, Michele
ONCOTARGET,  2018
Mozgunov, Pavel; Beccuti, Marco; Horvath, Andras; Jaki, Thomas; Sirovich, Roberta; Bibbona, Enrico*
REACTION KINETICS, MECHANISMS AND CATALYSIS,  2018
Pardini Barbara, Cordero Francesca, Naccarati Alessio, Viberti Clara, Birolo Giovanni, Oderda Marco, Di Gaetano Cornelia, Arigoni Maddalena, Martina Federica, Calogero Raffaele, Sacerdote Carlotta, Gontero Paolo, Vineis Paolo, Matullo Giuseppe
ONCOTARGET,  2018
Neha Kulkarni, Luca Alessandrì, Riccardo Panero, Maddalena Arigoni, Martina Olivero, Giulio Ferrero, Francesca Cordero, Marco Beccuti, Raffaele A. Calogero
BMC BIOINFORMATICS,  2018
Allione, Alessandra; Pardini, Barbara; Viberti, Clara; Giribaldi, Giuliana; Turini, Stefano; Di Gaetano, Cornelia; Guarrera, Simonetta; Cordero, Francesca; Oderda, Marco; Allasia, Marco; Gontero, Paolo; Sacerdote, Carlotta; Vineis, Paolo; Matullo, Giuseppe
CARCINOGENESIS,  2018
Totis Niccolo; Follia Laura; Riganti Chiara; Novelli Francesco; Cordero Francesca; Beccuti Marco; Balbo Gianfranco.
PERFORMANCE EVALUATION REVIEW,  2017
Ferrero, Giulio; Miano, Valentina; Beccuti, Marco; Balbo, Gianfranco; De Bortoli, Michele; Cordero, Francesca
SCIENTIFIC REPORTS,  2017
Beccuti, Marco; Cordero, Francesca; Arigoni, Maddalena; Panero, Riccardo; Amparore, Elvio G; Donatelli, Susanna; Calogero, Raffaele A.
BIOINFORMATICS,  2017
Martina, Federica; Beccuti, Marco; Balbo, Gianfranco; Cordero, Francesca
PLOS ONE,  2017
Beccuti, Marco; Genuardi, Elisa; Romano, Greta; Monitillo, Luigia; Barbero, Daniela; Boccadoro, Mario; Ladetto, Marco; Calogero, Raffaele; Ferrero, Simone; Cordero, Francesca
BMC BIOINFORMATICS,  2017
Ferrero, Giulio; Cordero, Francesca; Tarallo, Sonia; Arigoni, Maddalena; Riccardo, Federica; Gallo, Gaetano; Ronco, Guglielmo; Allasia, Marco; Kulkarni, Neha; Matullo, Giuseppe; Vineis, Paolo; Calogero, Raffaele A.; Pardini, Barbara; Naccarati, Alessio
ONCOTARGET,  2017
Miano, Valentina; Ferrero, Giulio; Reineri, Stefania; Caizzi, Livia; Annaratone, Laura; Ricci, Laura; Cutrupi, Santina; Castellano, Isabella; Cordero, Francesca; De Bortoli, Michele
ONCOTARGET,  2016
Rosso, Marilena Caterina; Badino, Paola; Ferrero, Giulio; Costa, Roberto; Cordero, Francesca; Steidler, Stephanie
PLOS ONE,  2016
Miglio, Gianluca; Sabatino, Alessandro Damiano; Veglia, Eleonora; Giraudo, Maria Teresa; Beccuti, Marco; Cordero, Francesca
BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS,  2016
Romano, Paolo; Cordero, Francesca
BMC BIOINFORMATICS,  2016
Angius, Alessio; Horvath, Andras; Halawani, Sami M.; Ba-Rukab, Omar M.; Ahmad, Ab Rahman; Balbo, Gianfranco .
COMPUTER SYSTEMS SCIENCE AND ENGINEERING,  2016
Medico, E; Russo, M; Picco, G; Cancelliere, C; Valtorta, E; Corti, G; Buscarino, M; Isella, C; Lamba, S; Martinoglio, B; Veronese, S; Siena, S; Sartore-Bianchi, A; Beccuti, M; Mottolese, M; Linnebacher, M; Cordero, F; Di Nicolantonio, F; # #co-last and corresponding; Bardelli, A
NATURE COMMUNICATIONS,  2015
Carrara, Matteo; Lum, Josephine; Cordero, Francesca; Beccuti, Marco; Poidinger, Michael; Donatelli, Susanna; Calogero, Raffaele; Zolezzi, Francesca
BMC BIOINFORMATICS,  2015
Fornari, Chiara; Balbo, Gianfranco; Halawani, Sami M; Ba-Rukab, Omar; Ahmad, Ab; Calogero, Raffaele A; Cordero, Francesca; Beccuti, Marco
BMC SYSTEMS BIOLOGY,  2015
Angius Alessio; Balbo Gianfranco; Beccuti Marco; Bibbona Enrico; Horvath Andras; Sirovich Roberta
THEORETICAL COMPUTER SCIENCE,  2015
Muñoz-Amatriaín, María; Lonardi, Stefano; Luo, Mingcheng; Madishetty, Kavitha; Svensson, Jan T.; Moscou, Matthew J.; Wanamaker, Steve; Jiang, Tao; Kleinhofs, Andris; Muehlbauer, Gary J.; Wise, Roger P.; Stein, Nils; Ma, Yaqin; Rodriguez, Edmundo; Kudrna, Dave; Bhat, Prasanna R.; Chao, Shiaoman; Condamine, Pascal; Heinen, Shane; Resnik, Josh; Wing, Rod; Witt, Heather N.; Alpert, Matthew; Beccuti, Marco; Bozdag, Serdar; Cordero, Francesca; Mirebrahim, Hamid; Ounit, Rachid; Wu, Yonghui; You, Frank; Zheng, Jie; Simková, Hana; Dolezel, Jaroslav; Grimwood, Jane; Schmutz, Jeremy; Duma, Denisa; Altschmied, Lothar; Blake, Tom; Bregitzer, Phil; Cooper, Laurel; Dilbirligi, Muharrem; Falk, Anders; Feiz, Leila; Graner, Andreas; Gustafson, Perry; Hayes, Patrick M.; Lemaux, Peggy; Mammadov, Jafar; Close, Timothy J.
PLANT JOURNAL,  2015
Slyskova, Jana; Cordero, Francesca; Pardini, Barbara; Korenkova, Vlasta; Vymetalkova, Veronika; Bielik, Ludovit; Vodickova, Ludmila; Pitule, Pavel; Liska, Vaclav; Matejka, Vit Martin; Levy, Miroslav; Buchler, Tomas; Kubista, Mikael; Naccarati, Alessio; Vodicka, Pavel
MOLECULAR CARCINOGENESIS,  2015
Cordero, Francesca; Ferrero, Giulio; Polidoro, Silvia; Fiorito, Giovanni; Campanella, Gianluca; Sacerdote, Carlotta; Mattiello, Amalia; Masala, Giovanna; Agnoli, Claudia; Frasca, Graziella; Panico, Salvatore; Palli, Domenico; Krogh, Vittorio; Tumino, Rosario; Vineis, Paolo; Naccarati, Alessio
CARCINOGENESIS,  2015
Abstract in journal
Gallo, G.; Tarallo, S.; Cordero, F.; Pardini, B.; Ferrero, G.; Vineis, P.; Clerico, G.; Realis Luc, A.; Naccarati, A.; Trompetto, M.
EUROPEAN JOURNAL OF CANCER,  2017
Catarsi, P; Cordero, F; Ferrero, G; Beccuti, M; Poletto, V; Bonetti, E; Villani, L; Massa, M; Fois, G; Campanelli, R; Magrini, U; Rosti, V; Barosi, G
BLOOD,  2016
Contribution in conference proceedings
Marco Beccuti, Lorenzo Capra, Massimiliano De Pierro, Giuliana Franceschinis, Simone Pernice
Computer Performance Engineering, 
European Workshop on Performance Engineering
2018
Pernice S., Beccuti M., Do P., Pennisi M., Pappalardo F.
Proceedings - 2018 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2018, 
IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2018
2018
Kordon F.; Garavel H.; Hillah L.M.; Paviot-Adet E.; Jezequel L.; Hulin-Hubard F.; Amparore E.; Beccuti M.; Berthomieu B.; Evrard H.; Jensen P.G.; Le Botlan D.; Liebke T.; Meijer J.; Srba J.; Thierry-Mieg Y.; van de Pol J.; Wolf K.
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 
The Seventh Model Checking Contest
2018
Amparore E.G.; Donatelli S.; Beccuti M.; Garbi G.; Miner A.
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 
International Workshop on Petri Nets and Software Engineering (PNSE 2017)
2018
Amparore E.G.; Beccuti M.; Botta M.; Donatelli S.; Tango F.
CEUR Workshop Proceedings, 
10th International Workshop on Agents in Traffic and Transportation, ATT 2018
2018
Ballarini, Paolo; Beccuti, Marco*; Bibbona, Enrico; Horvath, Andras; Sirovich, Roberta; Sproston, Jeremy
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 
14th European Workshop on Computer Performance Engineering, EPEW 2017
2017
Amparore Elvio Gilberto ; Beccuti Marco ; Donatelli Susanna
Automated Technology for Verification and Analysis, 
ATVA: 15th International Symposium on Automated Technology for Verification and Analysis
2017
Amparore, E. G., Donatelli, S., Beccuti, M., Garbi, G., Miner Andrew
Proceedings of the International Workshop on Petri Nets and Software Engineering (PNSE'17),, 
PNSE 2017 Petri Nets and Software Engineering
2017
Chivassa, G; Fornari, C; Sirovich, R; Pennisi, M; Beccuti, M; Cordero, F
2017 IEEE INTERNATIONAL CONFERENCE ON BIOINFORMATICS AND BIOMEDICINE (BIBM), 
IEEE International Conference on Bioinformatics and Biomedicine (IEEE BIBM)
2017
Totis, Niccolò; Beccuti, Marco; Cordero, Francesca; Follia, Laura; Riganti, Chiara; Novelli, Francesco; Balbo, Gianfranco
VALUETOOLS'16 proceedings of the 10th EAI International Conference on Performance Evaluation Methodologies and Tools on 10th EAI International Conference on Performance Evaluation Methodologies and Tools, 
10th EAI International Conference on Performance Evaluation Methodologies and Tools, ValueTools 2016
2017
Pardini, Barbara; Cordero, Francesca; Naccarati, Alessio; Ferrero, Giulio; Viberti, Clara; Oderda, Marco; Arigoni, Maddalena; Calogero, Raffaele; Sacerdote, Carlotta; Gontero, Paolo; Vineis, Paolo; Matullo, Giuseppe
Cancer Research, 
American Association for Cancer Research Annual Meeting 2017
2017
Duma, Denise; Cordero, Francesca; Beccuti, Marco; Ciardo, Gianfranco; Close, Timothy J.; Lonardi, Stefano
Lecture Notes in Computer Science, 
15th International Workshop on Algorithms in Bioinformatics, WABI 2015
2015
Duma, Denise; Cordero, Francesca; Beccuti, Marco; Ciardo, Gianfranco; Close, Timothy J.; Lonardi, Stefano
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 
15th International Workshop on Algorithms in Bioinformatics, WABI 2015
2015